Sunday, September 26, 2010

It Sounds Blue! Kandinsky and the Brain



The overwhelming "what? that's going on right now too?!" of New York City has hit me for real this month, so the blog posts are sadly lacking. But, since this science journalism stuff means I am bombarded with ideas and stories to write about a day, I'm going to make an extra effort to post more often (I need at least some partial record of my thoughts during these wonderfully-crazy months).

So, for starters, I have to share this amazing series in the New Scientist called "Six ways that artists hack your brain." It's all about the neuroscience and psychology of how we perceive/understand/interpret artwork (or get really confused by it). To my surprise, this cross-disciplinary field even has its own a name: neuroaesthetics. Below is a quote from one section about synaesthetes, people who have a neurological condition where their senses seem to get mixed up – they'll hear blue or taste yellow, for example.
LETTERS, words, numbers, sounds, touch, pain and smell all trigger flashes of colour in Carol Steen's mind. The New York-based artist first discovered she could paint her synaesthetic visions after a visit to her acupuncturist. "Each time a needle went in a colour flashed in front of my eyes," she recalls. "When all the needles were in it was like watching a movie. I rushed home and realised I could recall enough to paint a part of what I had seen."

Other synaesthetic artists include David Hockney and Wassily Kandinsky, who painted the piece below, entitled Blue. There is still some speculation over whether Kandinsky actually had synaesthesia or was simply influenced by reports of the phenomenon in other people. But to Christopher Tyler of the Smith-Kettlewell Brain Imaging Center in San Francisco, who has analysed Kandinsky's work, it is obvious (Journal of the History of Neuroscience, vol 12, p 223). "It's very explicit in his work and his writings. He went to a performance of Wagner's music and then wrote about how vivid the visual impressions of the horns were and the colour that the music evoked in his mind. That's synaesthesia," he says.

Steen agrees: "I saw a sphere like the one in Kandinsky's Blue in one of my acupuncture sessions. Since it is really hard to explain your visions to someone, I assume Kandinsky was a synaesthete." The striking colour contrast with the red dot is also familiar to her.

These experiences are probably due to extra connections between the auditory and visual cortex, says Jack Cowan, a mathematical neuroscientist at the University of Chicago. He thinks the additional flow of information into the visual cortex overloads its normal inhibitory mechanisms, allowing spontaneous waves of activity that would normally be eliminated to propagate through the brain. These signals may represent shape or colour. Since the brain can't tell whether a signal was generated within the brain or externally, synaesthetes see the shapes as if they came from the eye.

Check out the other parts of the series like the emotional response to impressionism or Dali's illusions. More to come soon!


Wednesday, September 8, 2010

Two Cultures (and many more)

The first official reading assignment for school (yes, very excited to be a student again!) is C.P. Snow's "The Two Cultures." I've come across this essay – originally a lecture in 1959 – several times over the past year, mostly in the context of "look what a knowledge gap there is between scientists and the public" or "scientists are just fundamentally different people from the rest." Snow articulates a serious problem he notices in Western society: the splitting of intellectual life (and in turn, practical life) into two polar groups that do not communicate and do not understand one another. These two groups, literary intellectuals and scientists, have become increasingly isolated by a "gulf of mutual incomprehension." The gulf is widened by hostility, distortion, and most of all just a lack of understanding. In later writings, Snow called for a "third culture" to bridge this gap.

Even though Snow was writing 50 years ago, his observations are still relevant today. Many recent articles and books reference the "two cultures" theme, although it seems the modern flavor of this dichotomy has shifted – less "science & humanities" and more "science & everyone else". Those who can speak science to the masses – bypassing the literary intellectuals – are what John Brockman, editor of the Edge magazine, calls "third-culture thinkers." This brand of intellectuals include people like E.O. Wilson, Stephen Jay Gould, Steven Pinker, Richard Dawkins, and Daniel Dennett. The success of popular science books may surprise the "old-style intellectuals," (Brockman's phrase) but he thinks this is just a sign that science is becoming the new popular culture. 

"The third culture consists of those scientists and other thinkers in the empirical world who, through their work and expository writing, are taking the place of the traditional intellectual in rendering visible the deeper meanings of our lives, redefining who and what we are... 
Today, third-culture thinkers tend to avoid the middleman and endeavor to express their deepest thoughts in a manner accessible to the intelligent reading public. The recent publishing successes of serious science books have surprised only the old-style intellectuals. Their view is that these books are anomalies--that they are bought but not read. I disagree. The emergence of this third-culture activity is evidence that many people have a great intellectual hunger for new and important ideas and are willing to make the effort to educate themselves."

While I do agree with much of Brockman's characterization, I have some concerns about these "third culture" scientists. Thinking it sufficient to communicate directly to the public, they sometimes ignore the arts and humanities altogether, or act as if science has taken its "rightful" place at the top of the intellectual kingdom. To build a bridge across the gulf, there must be collaboration and openness between the disciplines – what Jonah Lehrer's calls a "fourth culture.

“This fourth culture, much closer in concept to Snow’s original definition… will ignore arbitrary intellectual boundaries, seeking instead to blur the lines that separate. It will freely transplant knowledge between the sciences and humanities, and will focus on connecting the reductionist fact to our actual experience. It will take a pragmatic view of truth, and it will judge truth not by its origins but by its usefulness." (from Proust Was a Neuroscientist)

Chris Mooney, author of Unscientific America, agrees with Lehrer. But he takes the argument one step further, urging science to interact and learn from all parts of society. 

"It’s not just that we need people transplanting knowledge between science and humanities—it’s that we need people who can transplant between science, the humanities, politics, communication, law, business—and everything else. All other walks of life, types of talent, kinds of expertise…the more science draws upon these and the more these intersect with science, the closer science will move back into relationship with the society that fosters it." 

For Mooney, science should not attempt to take the place of other intellectual traditions, but rather it should mesh and share ideas freely with all of them. 

And at this rate (with enough communication, interaction, and Snow's 1959 lecture firmly in mind) we may end up with a fourth, fifth, or sixth culture sooner than we expect.


Related link: Are We Beyond the Two Cultures? Video series from seedmagazine.com

Thursday, August 26, 2010

Monkeying Around in Science


The Economist calls it "ironic." In the midst of working a book called Evilicious: Why We Evolved a Taste for Being Bad, evolutionary psychologist Marc Hauser has been accused of some wrongdoing of his own. Specifically, scientific misconduct and cheating. What exactly did he do? The Chronicle of Higher Education provides an overview:

It was one experiment in particular that led members of Mr. Hauser's lab to become suspicious of his research and, in the end, to report their concerns about the professor to Harvard administrators. The experiment tested the ability of rhesus monkeys to recognize sound patterns. Researchers played a series of three tones (in a pattern like A-B-A) over a sound system. After establishing the pattern, they would vary it (for instance, A-B-B) and see whether the monkeys were aware of the change. If a monkey looked at the speaker, this was taken as an indication that a difference was noticed. The method has been used in experiments on primates and human infants. Mr. Hauser has long worked on studies that seemed to show that primates, like rhesus monkeys or cotton-top tamarins, can recognize patterns as well as human infants do. Such pattern recognition is thought to be a component of language acquisition.

Researchers watched videotapes of the experiments and "coded" the results, meaning that they wrote down how the monkeys reacted. As was common practice, two researchers independently coded the results so that their findings could later be compared to eliminate errors or bias. According to the document that was provided to The Chronicle, the experiment in question was coded by Mr. Hauser and a research assistant in his laboratory. A second research assistant was asked by Mr. Hauser to analyze the results. When the second research assistant analyzed the first research assistant's codes, he found that the monkeys didn't seem to notice the change in pattern. In fact, they looked at the speaker more often when the pattern was the same. In other words, the experiment was a bust. But Mr. Hauser's coding showed something else entirely: He found that the monkeys did notice the change in pattern—and, according to his numbers, the results were statistically significant. If his coding was right, the experiment was a big success.

The second research assistant was bothered by the discrepancy. How could two researchers watching the same videotapes arrive at such different conclusions? He suggested to Mr. Hauser that a third researcher should code the results. In an e-mail message to Mr. Hauser, a copy of which was provided to The Chronicle, the research assistant who analyzed the numbers explained his concern. "I don't feel comfortable analyzing results/publishing data with that kind of skew until we can verify that with a third coder," he wrote. A graduate student agreed with the research assistant and joined him in pressing Mr. Hauser to allow the results to be checked, the document given to The Chronicle indicates. But Mr. Hauser resisted, repeatedly arguing against having a third researcher code the videotapes and writing that they should simply go with the data as he had already coded it. After several back-and-forths, it became plain that the professor was annoyed.

"i am getting a bit pissed here," Mr. Hauser wrote in an e-mail to one research assistant. "there were no inconsistencies! let me repeat what happened. i coded everything. then [a research assistant] coded all the trials highlighted in yellow. we only had one trial that didn't agree. i then mistakenly told [another research assistant] to look at column B when he should have looked at column D. ... we need to resolve this because i am not sure why we are going in circles."

The research assistant who analyzed the data and the graduate student decided to review the tapes themselves, without Mr. Hauser's permission, the document says. They each coded the results independently. Their findings concurred with the conclusion that the experiment had failed: The monkeys didn't appear to react to the change in patterns. They then reviewed Mr. Hauser's coding and, according to the research assistant's statement, discovered that what he had written down bore little relation to what they had actually observed on the videotapes. He would, for instance, mark that a monkey had turned its head when the monkey didn't so much as flinch. It wasn't simply a case of differing interpretations, they believed: His data were just completely wrong.

The reaction to the Hauser investigation has been a mix of outcry against academic dishonesty, frustration at a lack of research standards, and distress over the terrible blow to the scientific community. But a refreshingly optimistic angle comes from JL Vernon, who sees "Hausergate" as an opportunity to demonstrate the integrity of the scientific process. Here are some of his ideas:
My reaction to this story may surprise readers of my blog, because I believe there is a silver lining to this story.  If handled properly, this tragedy can do great things for science.  What we have here is a ripe opportunity to showcase the integrity of the scientific process.  As I mentioned in my recent article  on creating science brand loyalists, I think scientists need to be more transparent about the scientific process from experimental design through peer-reviewed publication.  By emphasizing the mechanisms built into the scientific process that brought this deception to an end, science communicators and journalists can make the public aware that science is a self-regulating system in which fraud will not endure.  While there were failures in the system, science ultimately prevailed.

In this particular case, the misconduct that led to the investigation of Dr. Hauser occurred at the earliest stage of the scientific process, the experimental design.  David Dobbs does a great job describing the weaknesses of Hauser’s experimental protocols. The experiments involved observation of video recordings of monkeys responding to certain stimuli that were varied over time in order to induce a response from the monkeys.  The monkeys’ reactions to the stimulus were recorded by the observer.  Based on a letter written by the whistleblower researchers, professor Hauser’s observations conflicted with those of his lab assistants.  After the researchers realized that Dr. Hauser was trying to force them to accept and publish shoddy data, they acted properly by approaching the Harvard University administration to address these issues of scientific misconduct.

For their bravery, the whistleblowers should be recognized as “loyal defenders” of science.  Not only did they end Dr. Hauser’s dangerous practices, they also fulfilled the unofficial oath for science.

Thankfully, once these individuals brought this issue to the attention of the Harvard University ombudsman and the Dean of Arts and Sciences, the appropriate investigation was undertaken.  As far as we know, Dean Smith did not delay the investigation and subsequent to the completion of the investigation Dr. Hauser was properly sanctioned.

Related Links: A letter from the Dean of the Faculty of Arts and Sciences describes the findings against Hauser in more detail. 

Tuesday, August 17, 2010

By any other cover?

Rightly or wrongly, we tend to judge books by their covers (ok, just a little bit). Why else would so much time be spent on their design? Some book cover designs are publicly declared great, making lists like the AIGA 50 Books/50 Covers, soon to be an exhibition in New York. Other times they go unnoticed, conveying the stories they contain so clearly they become invisible. And other times... they ruin the whole thing. This great collection of book cover before-and-afters shows just how crucial a cover can be – and highlights the success (or tragedy) of a redesign.

Some examples: 





Wednesday, July 28, 2010

Bigger the Better? Not So Much.

The WikiLeaks information dump of over 90,000 documents covering the war in Afghanistan has some journalists quite worried. Not just about the content of the reports (although there is plenty to be concerned with on that front), but about what the reaction to the leak means for the media and the public. Specifically, the lack of much reaction at all. NYU journalism professor Jay Rosen points out that often huge revelations produce the smallest consequences (how sadly ironic). At some level, the information overload is so great that people just ignore it and move on to something more bite-sized.
Some quotes: 
'We tend to think: big revelations mean big reactions. But if the story is too big and crashes too many illusions, the exact opposite occurs.' My fear is that this will happen with the Afghanistan logs. Reaction will be unbearably lighter than we have a right to expect— not because the story isn’t sensational or troubling enough, but because it’s too troubling, a mess we cannot fix and therefore prefer to forget.
Last week, it was the Washington Post’s big series, Top Secret America, two years in the making. It reported on the massive security shadowland that has arisen since 09/11. The Post basically showed that there is no accountability, no knowledge at the center of what the system as a whole is doing, and too much “product” to make intelligent use of. We’re wasting billions upon billions of dollars on an intelligence system that does not work. It’s an explosive finding but the explosive reactions haven’t followed, not because the series didn’t do its job, but rather: the job of fixing what is broken would break the system responsible for such fixes.
The mental model on which most investigative journalism is based states that explosive revelations lead to public outcry; elites get the message and reform the system. But what if elites believe that reform is impossible because the problems are too big, the sacrifices too great, the public too distractible? What if cognitive dissonance has been insufficiently accounted for in our theories of how great journalism works… and often fails to work?
I don’t have the answer; I don’t even know if I have framed the right problem.
Regardless of how it is framed, I think Rosen has identified a troubling problem. How does one communicate truly consequential ideas or findings in a way that has real consequence? How do you get someone out from under a pile of information to go act (and react) in the world? Is it a matter of being overwhelmed into paralysis or not really caring to begin with? Some questions worth considering.

The rest of Rosen's post also brings up a number of points about the nature of WikiLeaks (the "world’s first stateless news organization") and the rise of the political press. Read it here.

Related article at Slate: The WikiLeaks Paradox
And another (added 7/29): How to Give (and Take) a Leak - drip irrigation works better than a monsoon

Thursday, July 15, 2010

They're Made Out of Meat

Just came across a short story that brought me back to the beginning of high school. It'd be fair to say it was one of the first pieces of writing to get me interested in the whole mind/body problem and philosophy in general. I had completely forgotten about it. It's pretty amazing (in a gross but awesome sci-fi way).

They're Made out of Meat, by Terry Bisson

"They're made out of meat."
"Meat?"
"Meat. They're made out of meat."
"Meat?"
"There's no doubt about it. We picked up several from different parts of the planet, took them aboard our recon vessels, and probed them all the way through. They're completely meat."
"That's impossible. What about the radio signals? The messages to the stars?"
"They use the radio waves to talk, but the signals don't come from them. The signals come from machines."
"So who made the machines? That's who we want to contact."
"They made the machines. That's what I'm trying to tell you. Meat made the machines."
"That's ridiculous. How can meat make a machine? You're asking me to believe in sentient meat."
"I'm not asking you, I'm telling you. These creatures are the only sentient race in that sector and they're made out of meat."
"Maybe they're like the orfolei. You know, a carbon-based intelligence that goes through a meat stage."
"Nope. They're born meat and they die meat. We studied them for several of their life spans, which didn't take long. Do you have any idea what's the life span of meat?"
"Spare me. Okay, maybe they're only part meat. You know, like the weddilei. A meat head with an electron plasma brain inside."
"Nope. We thought of that, since they do have meat heads, like the weddilei. But I told you, we probed them. They're meat all the way through."
"No brain?"
"Oh, there's a brain all right. It's just that the brain is made out of meat! That's what I've been trying to tell you."
"So ... what does the thinking?"
"You're not understanding, are you? You're refusing to deal with what I'm telling you. The brain does the thinking. The meat."
"Thinking meat! You're asking me to believe in thinking meat!"
"Yes, thinking meat! Conscious meat! Loving meat. Dreaming meat. The meat is the whole deal!  Are you beginning to get the picture or do I have to start all over?"
"Omigod. You're serious then. They're made out of meat."
"Thank you. Finally. Yes. They are indeed made out of meat. And they've been trying to get in touch with us for almost a hundred of their years."
"Omigod. So what does this meat have in mind?"
"First it wants to talk to us. Then I imagine it wants to explore the Universe, contact other sentiences, swap ideas and information. The usual."
"We're supposed to talk to meat."
"That's the idea. That's the message they're sending out by radio. 'Hello. Anyone out there. Anybody home.' That sort of thing."
"They actually do talk, then. They use words, ideas, concepts?"
"Oh, yes. Except they do it with meat."
"I thought you just told me they used radio."
"They do, but what do you think is on the radio? Meat sounds. You know how when you slap or flap meat, it makes a noise? They talk by flapping their meat at each other. They can even sing by squirting air through their meat."
"Omigod. Singing meat. This is altogether too much. So what do you advise?"
"Officially or unofficially?"
"Both."
"Officially, we are required to contact, welcome and log in any and all sentient races or multibeings in this quadrant of the Universe, without prejudice, fear or favor. Unofficially, I advise that we erase the records and forget the whole thing."
"I was hoping you would say that."
"It seems harsh, but there is a limit. Do we really want to make contact with meat?"
"I agree one hundred percent. What's there to say? 'Hello, meat. How's it going?' But will this work? How many planets are we dealing with here?"
"Just one. They can travel to other planets in special meat containers, but they can't live on them. And being meat, they can only travel through C space. Which limits them to the speed of light and makes the possibility of their ever making contact pretty slim. Infinitesimal, in fact."
"So we just pretend there's no one home in the Universe."
"That's it."
"Cruel. But you said it yourself, who wants to meet meat? And the ones who have been aboard our vessels, the ones you probed? You're sure they won't remember?"
"They'll be considered crackpots if they do. We went into their heads and smoothed out their meat so that we're just a dream to them."
"A dream to meat! How strangely appropriate, that we should be meat's dream."
"And we marked the entire sector unoccupied."
"Good. Agreed, officially and unofficially. Case closed. Any others? Anyone interesting on that side of the galaxy?"
"Yes, a rather shy but sweet hydrogen core cluster intelligence in a class nine star in G445 zone. Was in contact two galactic rotations ago, wants to be friendly again."
"They always come around."
"And why not? Imagine how unbearably, how unutterably cold the Universe would be if one were all alone ..."


Apparently, some fans also made a short video version of the story.

Thursday, July 1, 2010

Article Published in ACSM Health & Fitness Journal!

"Injury Risks for the Female Athlete" is finally out in print!! After hopping and squealing around my room in excitement, I sat down and read the From the Editor at the beginning of the journal:
The risk of injury is low when doing moderate-intensity physical activity, but increases with exercise intensity, especially in a competitive environment. And in this regard, female athletes are at a higher risk than male athletes. In her feature, Injury Risks for the Female Athlete, Marielena Groeger, B.A., provides a concise review of women’s unique physiological and biomechanical responses to exercise that influences risk, and outlines measures that can be taken to prevent injury. Given the large number of girls and women involved in fitness programs and competitive sports, this article is an important read for all of us.

Yeah! So super happy about this.

(If you wanna read it, email me and I'll send you the final PDF)

And thanks to Hannah for this very relevant article in the NY Times about exercise science and women.